基于全基因组测序技术的副溶血性弧菌分子特征及耐药性研究
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大连市疾病预防控制中心,辽宁 大连 116035

作者简介:

陈玉凤 女 主任技师 研究方向为食源性和传染性细菌、寄生虫检测 E-mail: iamchenyufeng@163.com

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R155

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大连市医学科学研究计划(2311027)


Molecular characteristics and antibiotic resistance of Vibrio parahaemolyticus using whole genome sequencing
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Dalian Center for Disease Control and Prevention, Liaoning Dalian 116035, China

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    摘要:

    目的 了解大连市副溶血性弧菌(Vibrio parahaemolytics,VP)的基因组特征及耐药性,为VP分子溯源、毒力基因分析及耐药机制的研究提供所需数据支持。方法 本研究对2023年大连市分离的96株VP进行全基因组测序及药物敏感性试验,应用北京微未来病原微生物信息分析系统对全基因组测序数据进行拼接,对拼接的基因组序列进行MLST、cgMLST、cgSNP分析,并进行毒力基因和耐药基因分析,对耐药基因和耐药表型进行比较分析。结果 96株VP被分为9个ST型,以ST3型为主;96株VP被分为96个cgMLST和cgSNP型,表现出丰富的遗传多样性。96株VP携带毒力基因较多,其中16个毒力基因携带率差异有统计学意义(χ2=72.004,P<0.001),每个分离株菌至少携带11种毒力基因。19个耐药基因携带率差异有统计学意义(χ2=1539.1,P<0.001),CARBCRPtet(35)基因携带率最高,均为98.96%;其他耐药基因携带率均为1.04%。96株VP分离株对氨苄西林和多黏菌素E耐药率高,分别为57.29%和46.88%,对链霉素敏感性下降,中介率为53.13%;仅4株分离菌表现为多重耐药菌。结论 2023年大连市分离的96株VP具有遗传多样性,携带毒力基因和耐药基因,并且表现出对氨苄西林和多黏菌素E的耐药性。同时,本研究证明全基因组测序技术可为细菌的分子溯源、毒力基因分析及耐药机制的研究提供所需的数据支持。

    Abstract:

    Objective To understand the genomic characteristics and drug resistance of Vibrio parahaemolyticus (VP) isolated in Dalian City, and provide necessary data support for VP molecular tracing, virulence gene analysis, and drug resistance mechanism research.Methods This study conducted whole genome sequencing and drug sensitivity tests on 96 strains of VP isolated in Dalian City in 2023. The whole genome sequencing datas were assembled using the Beijing Micro Future Pathogenic Microbial Information Analysis System. The assembled genome sequences were subjected to MLST, cgMLST, and cgSNP analysis. Virulence genes and drug resistance genes were also analyzed, and a comparative analysis of drug resistance genes and phenotypes was conducted.Results Ninty-six strains of VP were divided into 9 ST types, with ST3 being the most prevalent.The 96 strains of VP were classified into 96 cgMLST and cgSNP types, exhibiting rich genetic diversity. Ninty-six strains of VP carried a large number of virulence genes, with a total of 16 virulence genes showing differences (χ2=72.004, P<0.001), and each strain carried at least 11 virulence genes. A total of 19 drug resistance genes showing differences (χ2=1539.1, P<0.001), with the highest carriage rates of CARB CRPand tet(35) genes, all at 98.96%; the carriage rates of other drug resistance genes were 1.04%. The resistance rates to ampicillin and colistin were high, at 57.29% and 46.88% respectively, and the sensitivity to streptomycin decreased, with an intermediate rate of 53.13%. Only 4 strains were multidrug-resistant.Conclusions The 96 strains of VP isolated in Dalian City in 2023 exhibit genetic diversity, and carry virulence genes and drug resistance genes, showing resistance to ampicillin and colistin. This study also demonstrated that whole genome sequencing technology can provide necessary data support for molecular tracing, virulence gene analysis and drug resistance mechanism research of pathogenic bacteria.

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陈玉凤,矫继龙,岳雪瑶,侯君,于鹏,薄志坚.基于全基因组测序技术的副溶血性弧菌分子特征及耐药性研究[J].中国食品卫生杂志,2025,37(8):699-706.

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  • 收稿日期:2025-02-05
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  • 在线发布日期: 2026-01-14
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