宏转录组测序解析诺如病毒相关性腹泻患者肠道微生物群落结构变化特征
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作者单位:

1.上海海关学院海关检验检疫系,上海 201204;2.上海国际旅行卫生保健中心(上海海关口岸门诊部),上海 200335;3.广东省科学院微生物研究所,华南应用微生物国家重点实验室,广东 广州 510070;4.复旦大学附属闵行医院,上海 221100

作者简介:

张子蕾 女 讲师 研究方向为食品安全监测与控制 E-mail: zhangzilei@shcc.edu.cn

通讯作者:

薛亮 男 研究员 研究方向为食源性病毒监测与控制 E-mail: xueliang@gdim.cn

中图分类号:

R155

基金项目:

国家自然科学基金(32302250);上海海关学院科研启动经费项目(kyqd202212);华南应用微生物国家重点实验室开放基金(SKLAM007-2022)


Metatranscriptomic insights into the structure of the gut microbiota in norovirus-associated diarrhea
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Affiliation:

1.Department of Inspection and Quarantine, Shanghai Customs University, Shanghai 201204 China;2.Shanghai International Travel Healthcare Center, Shanghai Customs District PR China, Shanghai 200335, China;3.State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangdong Guangzhou 510070, China;4.Minhang Hospital, Fudan University, Shanghai 221100, China

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    摘要:

    目的 探讨诺如病毒感染相关性腹泻患者肠道微生物群落的结构变化,筛选潜在微生物生物标志物,为病毒感染机制研究及微生态干预策略提供数据支持。方法 收集2018年全年55例诺如病毒感染个体(感染组)与15例非诺如病毒感染个体(对照组)粪便样本,采用宏转录组测序技术分析肠道微生物的组成与表达特征。通过主坐标分析与非度量多维尺度分析评估群落结构差异,结合LEfSe及Wilcoxon秩和检验识别差异菌群,并构建随机森林模型筛选具有诊断潜力的微生物标志物。结果 诺如病毒感染显著扰动肠道微生态系统,感染组在拟杆菌门(Bacteroidota)、厚壁菌门(Bacillota)、放线菌门(Actinomycetota)等菌门及粪杆菌属(Faecalibacterium)、拟杆菌属(Bacteroides)、另枝杆菌属(Alistipes)等菌属的表达丰度上显著高于对照组。随机森林模型识别出7个关键菌属作为潜在标志物,模型在测试集中表现出良好的预测性能(AUC=0.88)。结论 宏转录组测序揭示诺如病毒感染可导致肠道微生物群落结构的显著重构,相关菌属具有潜在的生物标志物价值,有望为诺如病毒感染的微生态干预策略提供潜在靶点。

    Abstract:

    Objective To provide data support for infectious mechanism and microecological intervention strategies, the structural and functional alterations of the gut microbiota in patients with norovirus associated diarrhea was investigated and the potential microbial biomarkers was screened.Methods Microbiota structure and expression from fecal samples from 55 in 2018 norovirus-infected patients and 15 healthy controls were subjected to metatranscriptomic sequencing. Microbial community differences were assessed using principal coordinate analysis and non-metric multidimensional scaling. Differential taxa were identified by LEfSe and Wilcoxon rank-sum test, and a random forest model was constructed to screen for potential diagnostic microbial biomarkers.Results Norovirus infection significantly altered gut microbial composition and expression profiles. Enriched taxa in the infection group included Bacteroidota, Bacillota, Actinomycetota at the phylum level and FaecalibacteriumBacteroidesAlistipes at the genus level. A random forest model based on genus-level abundances identified seven key genera with strong predictive performance (AUC=0.88).Conclusion Metatranscriptomic analysis revealed that norovirus infection induces notable shifts in gut microbiota structure and function. Several enriched genera may serve as potential microbial biomarkers for norovirus infection, offering insights into microecological diagnostics and intervention strategies.

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张子蕾,刘丹蕾,王祉怡,许嘉琪,郭泽宇,薛亮.宏转录组测序解析诺如病毒相关性腹泻患者肠道微生物群落结构变化特征[J].中国食品卫生杂志,2025,37(8):691-698.

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  • 收稿日期:2025-06-13
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  • 在线发布日期: 2026-01-14
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